#!/bin/bash
apex-1/Sample_
fastp -i p0_FRAS210094045-1r_1.fq.gz -I p0_FRAS210094045-1r_2.fq.gz \
-o ../clean_data/p0.1.clean.fq.gz -O ../clean_data/p0.2.clean.fq.gz \
-j ../clean_data/p0.json -h ../clean_data/p0.html

fastp -i p21_FRAS210094046-1r_1.fq.gz -I p21_FRAS210094046-1r_2.fq.gz \
-o ../clean_data/p21.1.clean.fq.gz -O ../clean_data/p21.2.clean.fq.gz \
-j ../clean_data/p21.json -h ../clean_data/p21.html

fastp -i p22_FRAS210094047-1r_1.fq.gz -I p22_FRAS210094047-1r_2.fq.gz \
-o ../clean_data/p22.1.clean.fq.gz -O ../clean_data/p22.2.clean.fq.gz \
-j ../clean_data/p22.json -h ../clean_data/p22.html


fastp -i p23_FRAS210094048-1r_1.fq.gz -I p23_FRAS210094048-1r_2.fq.gz \
-o ../clean_data/p23.1.clean.fq.gz -O ../clean_data/p23.2.clean.fq.gz \
-j ../clean_data/p23.json -h ../clean_data/p23.html
